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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: CTCF
wikigenes
PDBj
CellType: Peyers Patches
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX7509469
GSM4248457: TF ChIP-seq from Peyer's patch (ENCLB357MRH); Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
CTCF
Cell type
Cell type Class
Blood
Cell type
Peyers Patches
NA
NA
Attributes by original data submitter
Sample
sample_type
tissue
tissue
Peyer's patch
sex
male
dev_stage
adult
age
54 year
donor ID
ENCDO451RUA
lab
Bradley Bernstein, Broad
source
Kristin Ardlie
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/0bc735f0-1418-456c-a910-77992b868036/@@download/attachment/Bravo_ChIP_v2.0.pdf
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
19186365
Reads aligned (%)
97.6
Duplicates removed (%)
3.1
Number of peaks
21673 (qval < 1E-05)
hg19
Number of total reads
19186365
Reads aligned (%)
96.4
Duplicates removed (%)
3.8
Number of peaks
21587 (qval < 1E-05)
Base call quality data from
DBCLS SRA